KIBM Related Publications

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Conference Paper
Watanakeesuntorn W, Takahashi K, Ichikawa K, Park J, Sugihara G, Takano R, Haga J, Pao GM.  2020.  Massively Parallel Causal Inference of Whole Brain Dynamics at Single Neuron Resolution. 2020 IEEE 26th International Conference on Parallel and Distributed Systems (ICPADS).
Journal Article
Wittmann M, Simmons AN, Aron JL, Paulus MP.  2010.  Accumulation of neural activity in the posterior insula encodes the passage of time.. Neuropsychologia. 48(10):3110-20.
Li Y, Ritchie EM, Steinke CL, Qi C, Chen L, Zheng B, Jin Y.  2021.  Activation of MAP3K DLK and LZK in Purkinje cells causes rapid and slow degeneration depending on signaling strength.. Elife. 10
Plazas PV, Nicol X, Spitzer NC.  2013.  Activity-dependent competition regulates motor neuron axon pathfinding via PlexinA3.. Proc Natl Acad Sci U S A. 110(4):1524-9.
Demarque M, Spitzer NC.  2010.  Activity-dependent expression of Lmx1b regulates specification of serotonergic neurons modulating swimming behavior.. Neuron. 67(2):321-34.
Borodinsky LN, Root CM, Cronin JA, Sann SB, Gu X, Spitzer NC.  2004.  Activity-dependent homeostatic specification of transmitter expression in embryonic neurons.. Nature. 429(6991):523-30.
Borodinsky LN, Root CM, Cronin JA, Sann SB, Gu X, Spitzer NC.  2004.  Activity-dependent homeostatic specification of transmitter expression in embryonic neurons.. Nature. 429(6991):523-30.
Borodinsky LN, Spitzer NC.  2007.  Activity-dependent neurotransmitter-receptor matching at the neuromuscular junction.. Proc Natl Acad Sci U S A. 104(1):335-40.
Alexander AS, Tung JC, G Chapman W, Conner AM, Shelley LE, Hasselmo ME, Nitz DA.  2022.  Adaptive integration of self-motion and goals in posterior parietal cortex.. Cell Rep. 38(10):110504.
Scott J, Thakar S, Mao Y, Qin H, Hejran H, Lee S-Y, Yu T, Klezovitch O, Cheng H, Mu Y et al..  2019.  Apical-Basal Polarity Signaling Components, Lgl1 and aPKCs, Control Glutamatergic Synapse Number and Function.. iScience. 20:25-41.
Zhang Y, Tsang TKi, Bushong EA, Chu L-A, Chiang A-S, Ellisman MH, Reingruber J, Su C-Y.  2019.  Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons.. Nat Commun. 10(1):1560.
Kafaligonul H, Stoner GR.  2010.  Auditory modulation of visual apparent motion with short spatial and temporal intervals.. J Vis. 10(12):31.
Buchanan RJ, Darrow DP, Meier KT, Robinson J, Schiehser DM, Glahn DC, Nadasdy Z.  2014.  Changes in GABA and glutamate concentrations during memory tasks in patients with Parkinson's disease undergoing DBS surgery.. Front Hum Neurosci. 8:81.
Marek KW, Kurtz LM, Spitzer NC.  2010.  cJun integrates calcium activity and tlx3 expression to regulate neurotransmitter specification.. Nat Neurosci. 13(8):944-50.
Shaw PJ, Cirelli C, Greenspan RJ, Tononi G.  2000.  Correlates of sleep and waking in Drosophila melanogaster.. Science. 287(5459):1834-7.
Zablocki RW, Schork AJ, Levine RA, Andreassen OA, Dale AM, Thompson WK.  2014.  Covariate-modulated local false discovery rate for genome-wide association studies.. Bioinformatics. 30(15):2098-104.
Brennand KJ, M Marchetto C, Benvenisty N, Brüstle O, Ebert A, Belmonte JCarlos Izp, Kaykas A, Lancaster MA, Livesey FJ, McConnell MJ et al..  2015.  Creating Patient-Specific Neural Cells for the In Vitro Study of Brain Disorders.. Stem Cell Reports. 5(6):933-45.
Brennand KJ, M Marchetto C, Benvenisty N, Brüstle O, Ebert A, Belmonte JCarlos Izp, Kaykas A, Lancaster MA, Livesey FJ, McConnell MJ et al..  2015.  Creating Patient-Specific Neural Cells for the In Vitro Study of Brain Disorders.. Stem Cell Reports. 5(6):933-45.
Brennand KJ, M Marchetto C, Benvenisty N, Brüstle O, Ebert A, Belmonte JCarlos Izp, Kaykas A, Lancaster MA, Livesey FJ, McConnell MJ et al..  2015.  Creating Patient-Specific Neural Cells for the In Vitro Study of Brain Disorders.. Stem Cell Reports. 5(6):933-45.
Brennand KJ, M Marchetto C, Benvenisty N, Brüstle O, Ebert A, Belmonte JCarlos Izp, Kaykas A, Lancaster MA, Livesey FJ, McConnell MJ et al..  2015.  Creating Patient-Specific Neural Cells for the In Vitro Study of Brain Disorders.. Stem Cell Reports. 5(6):933-45.
Srinivasan S, Greenspan RJ, Stevens CF, Grover D.  2018.  Deep(er) Learning.. J Neurosci. 38(34):7365-7374.
Srinivasan S, Greenspan RJ, Stevens CF, Grover D.  2018.  Deep(er) Learning.. J Neurosci. 38(34):7365-7374.
Duricki DA, Hutson TH, Kathe C, Soleman S, Gonzalez-Carter D, Petruska JC, H Shine D, Chen Q, Wood TC, Bernanos M et al..  2016.  Delayed intramuscular human neurotrophin-3 improves recovery in adult and elderly rats after stroke.. Brain. 139(Pt 1):259-75.
Duricki DA, Hutson TH, Kathe C, Soleman S, Gonzalez-Carter D, Petruska JC, H Shine D, Chen Q, Wood TC, Bernanos M et al..  2016.  Delayed intramuscular human neurotrophin-3 improves recovery in adult and elderly rats after stroke.. Brain. 139(Pt 1):259-75.
Mertens J, Wang Q-W, Kim Y, Yu DX, Pham S, Yang B, Zheng Y, Diffenderfer KE, Zhang J, Soltani S et al..  2015.  Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder.. Nature. 527(7576):95-9.
Mertens J, Wang Q-W, Kim Y, Yu DX, Pham S, Yang B, Zheng Y, Diffenderfer KE, Zhang J, Soltani S et al..  2015.  Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder.. Nature. 527(7576):95-9.
Srinivasan S, Stevens CF.  2018.  The distributed circuit within the piriform cortex makes odor discrimination robust.. J Comp Neurol. 526(17):2725-2743.
Srinivasan S, Stevens CF.  2018.  The distributed circuit within the piriform cortex makes odor discrimination robust.. J Comp Neurol. 526(17):2725-2743.
Kent CF, Daskalchuk T, Cook L, Sokolowski MB, Greenspan RJ.  2009.  The Drosophila foraging gene mediates adult plasticity and gene-environment interactions in behaviour, metabolites, and gene expression in response to food deprivation.. PLoS Genet. 5(8):e1000609.
Ward S, Riley C, Carey EM, Nguyen J, Esener S, Nimmerjahn A, Sirbuly DJ.  2022.  Electro-optical mechanically flexible coaxial microprobes for minimally invasive interfacing with intrinsic neural circuits.. Nat Commun. 13(1):3286.
Root CM, Velázquez-Ulloa NA, Monsalve GC, Minakova E, Spitzer NC.  2008.  Embryonically expressed GABA and glutamate drive electrical activity regulating neurotransmitter specification.. J Neurosci. 28(18):4777-84.
Thakar S, Wang L, Yu T, Ye M, Onishi K, Scott J, Qi J, Fernandes C, Han X, Yates JR et al..  2017.  Evidence for opposing roles of Celsr3 and Vangl2 in glutamatergic synapse formation.. Proc Natl Acad Sci U S A. 114(4):E610-E618.
Aimon S, Katsuki T, Jia T, Grosenick L, Broxton M, Deisseroth K, Sejnowski TJ, Greenspan RJ.  2019.  Fast near-whole-brain imaging in adult Drosophila during responses to stimuli and behavior.. PLoS Biol. 17(2):e2006732.
Ferveur JF, Störtkuhl KF, Stocker RF, Greenspan RJ.  1995.  Genetic feminization of brain structures and changed sexual orientation in male Drosophila.. Science. 267(5199):902-5.
Ferveur JF, Störtkuhl KF, Stocker RF, Greenspan RJ.  1995.  Genetic feminization of brain structures and changed sexual orientation in male Drosophila.. Science. 267(5199):902-5.
Tsang TKi, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su C-Y, Ellisman MH.  2018.  High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues.. Elife. 7
Shultzaberger RK, Paddock ML, Katsuki T, Greenspan RJ, Golden SS.  2015.  High-throughput and quantitative approaches for measuring circadian rhythms in cyanobacteria using bioluminescence.. Methods Enzymol. 551:53-72.
Ng S, Payne BR, Stine-Morrow EAL, Federmeier KD.  2018.  How struggling adult readers use contextual information when comprehending speech: Evidence from event-related potentials.. Int J Psychophysiol. 125:1-9.
Dulcis D, Spitzer NC.  2008.  Illumination controls differentiation of dopamine neurons regulating behaviour.. Nature. 456(7219):195-201.
Pinto-Duarte A, Roberts AJ, Ouyang K, Sejnowski TJ.  2019.  Impairments in remote memory caused by the lack of Type 2 IP3 receptors. Glia. 67:1976-1989.

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